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Cited article:

Which barcode to decipher freshwater microalgal assemblages? Tests on mock communities

Alexis Canino, Clarisse Lemonnier, Benjamin Alric, Agnès Bouchez, Isabelle Domaizon, Christophe Laplace-Treyture, Frédéric Rimet

Microalgae taxa can be identified with short DNA barcodes. Eight primer pairs for 16S and five for 23S were tested in silico and with mock communities including cyanobacteria and eukaryotic microalgae. We conclude that the 23S primer pair ECLA23S_F1/ECLA23S_R1 was the best candidate to decipher freshwater phytoplankton communities.

Int. J. Lim., 59 (2023) 8

Published online: 2023-09-18

DOI: https://doi.org/10.1051/limn/2023008

This article has been cited by the following article(s):

A novel framework for phytoplankton biomonitoring: Trait assignment of 23S rRNA sequences

Kálmán Tapolczai, Frédéric Rimet, Miloš Ćirić, Andreas Ballot, Christophe Laplace-Treyture and Benjamin Alric
Ecological Indicators 173 113361 (2025)
https://doi.org/10.1016/j.ecolind.2025.113361

Environmental Matrices Need Consideration: Insights From Water and Biofilm Environmental DNA for Multi‐Taxonomic Biomonitoring

Paula Gauvin, Isabelle Domaizon, Agnes Bouchez and Frédéric Rimet
Environmental DNA 7 (2) (2025)
https://doi.org/10.1002/edn3.70079

Assessing the relevance of DNA metabarcoding compared to morphological identification for lake phytoplankton monitoring

Maria Mercedes Nicolosi Gelis, Alexis Canino, Agnès Bouchez, Isabelle Domaizon, Christophe Laplace-Treyture, Frédéric Rimet and Benjamin Alric
Science of The Total Environment 914 169774 (2024)
https://doi.org/10.1016/j.scitotenv.2023.169774